rs257962396 SNP Detail

Summary

• ID
  rs257962396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62488760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGCTGT CTTGTGGCTG
  AAAATCACTC AAATGAAGTG CATTTTTACC TTCTTAGGAT CCTATTTTTG GCATTTTTTT
  TCTCATACCA AACCTCACAG CAAACCTGAA AAGGACTAGA TTCTATTAGT CATTCAAGTG
  ACTGCTTCCC AAATTGTGAC ACCTTCGGCG CCAACAAATG TGGCCTTTCT AAGTCCTAAT
  R
  GCCTGAACTA ATTCTCTTAT CAAGTGGGGA AGGAGATTGG AGATCTACAC ATGAGTAACT
  TGCCCAAGGA GTGAAGGACT TGGTCGATAT TAGCTTAATT GATCAGGAAA CATGGGAACA
  GGAACTATAA TTTTAATTTA AAACTCAAAA GATTTATGTC TGATCGTGAG ATTTGGAACC
  AAGGGGAATT AAAACAACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380622864	MGP_WTSI_10_62115729	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257962396					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380622864	MGP_WTSI_10_62115729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62488760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1632	CpG island 1632	1068 bp distal
Ddx50	DExD box helicase 50	1763 bp upstream
Gm66017	predicted gene, 66017	531 bp downstream
Rr369004	regulatory region 369004	1496 bp downstream
Rr432661	regulatory region 432661	1774 bp distal
Rr432662	regulatory region 432662	1316 bp distal
Rr432663	regulatory region 432663	593 bp distal
Tssr93725	transcription start site region 93725	1304 bp downstream
Tssr93726	transcription start site region 93726	1275 bp downstream
Tssr93727	transcription start site region 93727	1255 bp downstream
Tssr97868	transcription start site region 97868	1789 bp upstream
Tssr97869	transcription start site region 97869	1747 bp upstream