rs257963539 SNP Detail

Summary

• ID
  rs257963539
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53932655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCACCAG CCGGAAAGGA
  AACCCTCTGC CAGCGGAAGC GGCCCGGGGC CTCCGCTTAG TCTTCTCCCA GCTCCCTCCC
  TGCGGTTCAT CCGGCCTGGC CGGCCCTGCT GTAGGGCGTC AGGGACACTT ACCTCACTCG
  TCAGCTCTGG GAGAGGAGGC ACCCCCTGGG GCGCAGGCGG GGTCCGGCTA CTCCCACCTC
  M
  TGGCCATGAC CCTACTAGGA AGTGCAAGCG CAACTTCCGG TGCGAGGGAG TTTTGAAGCC
  CTAAACTGTA GTTCTAGGTA AGCGATCAGG GGCTCCGTAA AGGGTCTGGC AAGCAAACCG
  GCAGTTCCCG ATCGCGAATT AACTCGCCCA GTGTGGACTG TGTGTGTGCA CATCCTCCGT
  AAGTATACTT ACAGGTGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402802509	MGP_WTSI_19_54018714	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257963539					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402802509	MGP_WTSI_19_54018714	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53932655 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	within coordinates
Cpgi11070	CpG island 11070	within coordinates
Rr394562	regulatory region 394562	within coordinates
Rr549684	regulatory region 549684	55 bp distal
Rr549685	regulatory region 549685	312 bp distal
Rr549686	regulatory region 549686	within coordinates
Rr549687	regulatory region 549687	93 bp proximal
Rr549688	regulatory region 549688	226 bp proximal
Rr549689	regulatory region 549689	667 bp proximal
Shoc2	Shoc2, leucine rich repeat scaffold protein	82 bp upstream
Tssr5553	transcription start site region 5553	35 bp downstream
Tssr157049	transcription start site region 157049	128 bp downstream
Tssr157050	transcription start site region 157050	616 bp upstream
Tssr157051	transcription start site region 157051	646 bp upstream
Tssr157052	transcription start site region 157052	1692 bp upstream
Tssr159836	transcription start site region 159836	within coordinates
Tssr159837	transcription start site region 159837	9 bp downstream
Tssr159838	transcription start site region 159838	212 bp downstream
Tssr159839	transcription start site region 159839	397 bp downstream