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rs257965848 SNP Detail
Summary
  • ID
    rs257965848
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:126621895 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGCCCCTCC TCAATACCAC
    CTTTTCTCTC CTCTGGGACA GAATCTTCTT TCCCCTCCTC TCTCCTCCCT ACCCCTGGGA
    AAAAACAACA ACAAAAAAGA AAGCACCAAC TCCCCAGGAA GGGGCAGCAG ACAGTAGGGG
    AGGGGACAGA AGGAGGAGAG CACAGGACCT TCTAGGAAAG GCTCACAAAT CCCTGGGAGG
    M
    AAGGCAAGGG GTTAAAGGTG AGGGCAGTGG CTGCTGCTGT CCTCTGCCAC CCCTGCTCAT
    TGTCCAGGGG ACTTCAACAC AACTCAGGGG ACAGGTGTTT GTAGGGTCAG CTCTGATAGG
    GAGAAGAAAG GAGCAGGAGA AACATTGTTA AAACCTAGTG AATTCCTTCT TCCTCCTCTC
    TGTCTGGAGG CTCCTTGGTT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373079228 MGP_WTSI_7_134166237 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257965848 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss373079228 MGP_WTSI_7_134166237 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:126621895 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi19726 CpG island 19726 1294 bp distal
Gm42742 predicted gene 42742 1626 bp upstream
Gm53372 predicted gene, 53372 459 bp downstream
Maz MYC-associated zinc finger protein (purine-binding transcription factor) within coordinates
Prrt2 proline-rich transmembrane protein 2 1512 bp upstream
Rr368440 regulatory region 368440 1639 bp upstream
Rr655670 regulatory region 655670 1597 bp distal
Rr655671 regulatory region 655671 1326 bp distal
Rr655672 regulatory region 655672 1363 bp distal
Rr655673 regulatory region 655673 422 bp distal
Tssr69153 transcription start site region 69153 1361 bp downstream
Tssr69154 transcription start site region 69154 1309 bp downstream
Tssr69155 transcription start site region 69155 1276 bp downstream
Tssr74898 transcription start site region 74898 1666 bp upstream
Tssr74899 transcription start site region 74899 1588 bp upstream
Tssr74900 transcription start site region 74900 1571 bp upstream
Tssr74901 transcription start site region 74901 1534 bp upstream
Tssr74902 transcription start site region 74902 1507 bp upstream
Tssr74903 transcription start site region 74903 1128 bp upstream
Tssr74904 transcription start site region 74904 1088 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory