rs257969566 SNP Detail

Summary

• ID
  rs257969566
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90979092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCCAC CCTCCAAGTA
  GATTACATGC AAGTGTAACC AGGACATAGC ATTTAGATTT AAATGGCACT GCCAAGGGTC
  GATAGGAAAC ATACGGATTT CCAGATTTCT GGAGCTGGGA ACCGCCCACG TCTGTCACCA
  AACAGGACAG ACTGGGTTCA CCTGAGTCAA AATGTGGCAC CTGAGAGAGC AGGCTGTTAG
  K
  GTGCTGGCTG CCATAACATG TTGCCATTCT GTGGAATCGC AAGTCTTTTA TGTGTTTATC
  GCTATTCTAT GGCTGGTGGT GTATCCCAAC TCTTGAGGCT AGGAATCTCA CTGTCCTGCT
  CCCTCCCACT GTCCGTCCCC CCCACCCCCA GGGAGACAGT GGGAGGAGTG AGGGGAGGAA
  TTATCCTTTT CTCTGGCTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350468117	MGP_WTSI_1_92947947	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257969566					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468117	MGP_WTSI_1_92947947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90979092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	1140 bp proximal
Gm70621	predicted gene, 70621	1930 bp upstream
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	109 bp proximal
Rr29813	regulatory region 29813	708 bp proximal
Rr396168	regulatory region 396168	1391 bp upstream
Tssr8030	transcription start site region 8030	1834 bp downstream
Tssr8031	transcription start site region 8031	1665 bp downstream
Tssr8032	transcription start site region 8032	1804 bp upstream
Tssr12924	transcription start site region 12924	1446 bp downstream
Tssr12925	transcription start site region 12925	1464 bp downstream
Tssr12926	transcription start site region 12926	1484 bp downstream
Tssr12927	transcription start site region 12927	1517 bp downstream
Tssr12928	transcription start site region 12928	1667 bp downstream