rs257976074 SNP Detail

Summary

• ID
  rs257976074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130554235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctccctgct tgatcactaa ttgagaaaat
  gccccacagc tggatctcat ggaggcactt ccccaactga agctcctttc tctgtgataa
  ctccagcctg tgtccagttg acacacaaaa ccagccagtc caATGACTGT GTGCAGTTGG
  R
  CAGGGGCTTG CTGTTCATCC CCTCAGGGAG ACTCCAGCTT CAGGCTGCAA AGAGAATCTT
  GCCCTAAAGG ATATAGGAAC TGGAGCCATG CACGAGGAGA GACTGTGCCC TTGGGGTCTG
  ATATGTTCAT TCTTGTTGGG TTTTGGtttt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318884	CHEV_4_130382839	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257976074					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130554235 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	611 bp upstream
Rr600596	regulatory region 600596	1721 bp proximal
Sdc3	syndecan 3	606 bp downstream
Tssr39293	transcription start site region 39293	1046 bp downstream
Tssr39294	transcription start site region 39294	886 bp downstream
Tssr39295	transcription start site region 39295	721 bp downstream
Tssr39296	transcription start site region 39296	693 bp downstream