rs257981938 SNP Detail

Summary

• ID
  rs257981938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136348434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCTCTGC ATGTGTATGA
  GTGTGTGACT CTGTGAGTGT GTATATGTGT ATGTACGTGT GTGTGTGTGT GTGTGTGTGT
  ATGTGTGTGA TTGTGTATAT GTGTGTATGT GTGTGCTATT ATGTGTATGT ATATGTACTG
  GTATGTGTGT ATGTGTGTAT ATGTGTCTGT GAGTATGTGC TGTGTGTGTA TATATGTGTA
  Y
  GTGTGTGTGC TGGTACATGT GTGTATGTGC ATGTTTATGT GTATCTCTGT GAGTATGAGT
  GTATATGTGA GTGTGTGACT GTGTGCAAGT GTATATATGT GTGCATATAT GTGTGGCTGT
  GAGTATGTGT GTTTATGTGC TAGTGTGTGT ATGTGTGTGT TTATGTGCTA GTGTGTGTGT
  GTATGTGTGT ATATATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321356442	CHEV_4_136177038	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257981938					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136348434 () rs orientation: forward

Symbol	Name	Function Class
Lactbl1	lactamase, beta-like 1	1498 bp upstream
Rr86434	regulatory region 86434	within coordinates
Rr103033	regulatory region 103033	1035 bp distal
Rr106544	regulatory region 106544	323 bp proximal
Rr398615	regulatory region 398615	202 bp upstream
Tssr39716	transcription start site region 39716	1489 bp upstream
Tssr39717	transcription start site region 39717	1508 bp upstream