rs257985904 SNP Detail

Summary

• ID
  rs257985904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7350590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGTGATC TCAAAGAATA
  TGTTCTGACA AAGATTACAT TATATTATGA AATAACAAAT TCTAATTATG TTTGCCTCTA
  AATCAAATTT AAGATTCTTT ATACGTAGTG CAATTTTCCC CATTGTGAAT CAGGGATGTT
  GGACATGATT GTGATAGAGA TCATCTCCAA GGACCACTAA GATTCTATGA GCAAGGTCTG
  Y
  ATACTTGGAA ATGTGAAAGA TTTTAGTTGG GTTTTGGCCA GTAAAATCTA TAAACTTAAA
  AGAACACACT AATTCTGTGT GATCCATCTT ATGTTAGCAA TTTCTTAGTT CCACGGTGAT
  CCCTAAAGAT AATTAGAGAA AATTATAGAA AAAAGATCAT TGCAGATCCC TGTGGATCTT
  GATGTCCTGG AGCCTTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560274	MGP_WTSI_9_7350590	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257985904					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560274	MGP_WTSI_9_7350590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7350590 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83689	transcription start site region 83689	1999 bp downstream
Tssr83690	transcription start site region 83690	1972 bp downstream
Tssr83691	transcription start site region 83691	1943 bp downstream
Tssr83692	transcription start site region 83692	1920 bp downstream
Tssr83693	transcription start site region 83693	1888 bp downstream
Tssr83694	transcription start site region 83694	1859 bp downstream
Tssr83695	transcription start site region 83695	1777 bp downstream
Tssr83696	transcription start site region 83696	1714 bp downstream
Tssr83697	transcription start site region 83697	1673 bp downstream
Tssr83698	transcription start site region 83698	1496 bp downstream
Tssr83699	transcription start site region 83699	1472 bp downstream
Tssr83700	transcription start site region 83700	1411 bp downstream
Tssr83701	transcription start site region 83701	1363 bp downstream
Tssr83702	transcription start site region 83702	1341 bp downstream
Tssr83703	transcription start site region 83703	859 bp downstream
Tssr83704	transcription start site region 83704	825 bp downstream
Tssr83705	transcription start site region 83705	563 bp downstream
Tssr83706	transcription start site region 83706	536 bp downstream
Tssr83707	transcription start site region 83707	514 bp downstream
Tssr83708	transcription start site region 83708	496 bp downstream
Tssr83709	transcription start site region 83709	473 bp downstream
Tssr83710	transcription start site region 83710	26 bp upstream
Tssr83711	transcription start site region 83711	513 bp upstream
Tssr83712	transcription start site region 83712	1383 bp upstream
Tssr83713	transcription start site region 83713	1785 bp upstream
Tssr83714	transcription start site region 83714	1957 bp upstream
Tssr88064	transcription start site region 88064	1861 bp upstream
Tssr88065	transcription start site region 88065	1770 bp upstream
Tssr88066	transcription start site region 88066	467 bp upstream