rs257987961 SNP Detail

Summary

• ID
  rs257987961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77441290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCTTGA CCCCTTAGCC
  AGGGCTCCCG ATGGATCTTC CAGCTCAAGC TTCCCTTGTT TTGCTTATCT AGTTGACTCC
  TTGGGCATGT TATTAAACTT CTAGGCATCT TGGTGTGCTG TGTAAAATGG GTTATTAGTG
  TCCACAATAG CATTCCAGAA ACAGCAAATG GTAGGTCAGA AGGGAAGCTT TCTGTGCCTG
  Y
  CACTCTCACC CACCCAAGCC ACCTAGTGGT TACTTTGGGA CTACGTAAGG AGGGAGAAAG
  GCAGCTAGAT AGTGAGAATG AAGGGGAAGA GCTTGTCCTT CTGGAGAGCC ATCTTGGGAA
  TGGCCCTTGT GGAGGCTGGT CCACCCCATC CAGGAAATCA AATGAAAAAA GATGAAATGG
  GAGCATGTGC TGGCTTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380971330	MGP_WTSI_10_77068201	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257987961					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971330	MGP_WTSI_10_77068201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77441290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1760	CpG island 1760	74 bp proximal
D10Jhu54	DNA segment, Chr 10, Johns Hopkins University 54	687 bp distal
Gm49325	predicted gene, 49325	741 bp upstream
Rr384959	regulatory region 384959	1518 bp downstream
Rr402005	regulatory region 402005	960 bp upstream
Rr434545	regulatory region 434545	1193 bp distal
Rr434546	regulatory region 434546	151 bp proximal
Rr434547	regulatory region 434547	1126 bp proximal
Sumo3	small ubiquitin-like modifier 3	641 bp upstream
Tssr94265	transcription start site region 94265	588 bp upstream
Tssr94266	transcription start site region 94266	761 bp upstream
Tssr94267	transcription start site region 94267	788 bp upstream
Tssr94268	transcription start site region 94268	1122 bp upstream
Tssr94269	transcription start site region 94269	1205 bp upstream
Tssr94270	transcription start site region 94270	1239 bp upstream
Tssr98239	transcription start site region 98239	1657 bp downstream