rs257992422 SNP Detail

Summary

• ID
  rs257992422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129856310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGCACC ATAATCTGCT
  TGCAGGCTGC TATCCTTCCC ACCCTGATGA TAATGGACTA AACCTCAGAA ACTGGAAGCC
  AGCCCCAAAT TAAATATTTC TCTTTATAAG AGTTGCTGTG GTCATGGTGT CTCTTCACAG
  AAATGAAACC CTAAGACACC CTCCATCAAA AGGAGTTGTT TCTCATACCT CTAGCAGGAG
  Y
  GACTATATAT ATATAACTAC CTGTGGTGTC CATTAGCATA TCAAAATCCA TGCTGCCCTC
  CATCGTTCCT CTGTACCACG AATACCTGTT ATACATCTCA AAGTCCATCC TAGCCCGTCT
  CACCTCATCC CCACCCTAAA TTCCTTTCAG CTCACAGGCT CCTCTCCCCT CAGCTACTCA
  GTCTCCTTAG AGCCCTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359703504	MGP_WTSI_3_129765579	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257992422					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359703504	MGP_WTSI_3_129765579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129856310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	1276 bp distal
Rr585124	regulatory region 585124	1765 bp distal
Rr585125	regulatory region 585125	1769 bp distal
Rr585126	regulatory region 585126	1264 bp distal
Sec24b	SEC24 homolog B, COPII coat complex component	1108 bp upstream
Tssr31665	transcription start site region 31665	1870 bp downstream
Tssr35653	transcription start site region 35653	1928 bp upstream
Tssr35654	transcription start site region 35654	1903 bp upstream
Tssr35655	transcription start site region 35655	1835 bp upstream
Tssr35656	transcription start site region 35656	1812 bp upstream
Tssr35657	transcription start site region 35657	1796 bp upstream
Tssr35658	transcription start site region 35658	1631 bp upstream
Tssr35659	transcription start site region 35659	1153 bp upstream
Tssr35660	transcription start site region 35660	1076 bp upstream