GAAGGAAGCT GGCATTTACC TAAGCCAACT GGAACTTGCT ATTATTTACA GGTCAAGAGT TAAAATTTAT TGAAGTTTGC TTTGATGAAA GAGGTTTACG TTCAGACTTT TGTACTTTCC AGCCTTAATT ACTAACCTCA TTAATCCTTA CTTAATCGTT GCTATTGTCT AAGGTAGTCC TAATGCCATT TTTACCTGTT Y GGGATGGTTA ACATAACCGA GGTGAAACCA AAGAACTGAA CAGTTAAAGG ATTCAAAGTT CACGCGAACA CACTGACAAA AAGAGTTGAG CCTCTTCAGT ATTTCAAACA CATGTCAAAA TAATTTAAGG TCATTTTAGA AATAAGCAAG TCTTGGAAAT AGAGGAACGG CGGATTAATA AAAGATTACA GGATATAGCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss359739285 | MGP_WTSI_3_131152350 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs258005369 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss359739285 | MGP_WTSI_3_131152350 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr3:131195147 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13839 | CpG island 13839 | 226 bp proximal | ||||||
Gm36753 | predicted gene, 36753 | 930 bp upstream | ||||||
Rr585350 | regulatory region 585350 | 495 bp distal | ||||||
Rr585351 | regulatory region 585351 | 506 bp proximal | ||||||
Rr585352 | regulatory region 585352 | 1019 bp proximal | ||||||
Rr585353 | regulatory region 585353 | 1279 bp proximal | ||||||
Sgms2 | sphingomyelin synthase 2 | within coordinates | ||||||
Tssr1055 | transcription start site region 1055 | 326 bp upstream | ||||||
Tssr1056 | transcription start site region 1056 | 619 bp upstream | ||||||
Tssr31735 | transcription start site region 31735 | 351 bp upstream | ||||||
Tssr31736 | transcription start site region 31736 | 965 bp upstream | ||||||
Tssr35707 | transcription start site region 35707 | 365 bp upstream | ||||||
Tssr35708 | transcription start site region 35708 | 336 bp upstream | ||||||
Tssr35709 | transcription start site region 35709 | 361 bp downstream | ||||||
Tssr35710 | transcription start site region 35710 | 377 bp downstream | ||||||
Tssr35711 | transcription start site region 35711 | 525 bp downstream | ||||||
Tssr35712 | transcription start site region 35712 | 551 bp downstream | ||||||
Tssr35713 | transcription start site region 35713 | 792 bp downstream | ||||||
Tssr35714 | transcription start site region 35714 | 1066 bp downstream | ||||||
Tssr35715 | transcription start site region 35715 | 1124 bp downstream | ||||||
Tssr35716 | transcription start site region 35716 | 1267 bp downstream | ||||||
Tssr35717 | transcription start site region 35717 | 1343 bp downstream | ||||||
Tssr35718 | transcription start site region 35718 | 1361 bp downstream | ||||||
Tssr35719 | transcription start site region 35719 | 1604 bp downstream | ||||||
Tssr35720 | transcription start site region 35720 | 1667 bp downstream | ||||||
Tssr35721 | transcription start site region 35721 | 1889 bp downstream | ||||||
Tssr35722 | transcription start site region 35722 | 1941 bp downstream | ||||||
Tssr35723 | transcription start site region 35723 | 2000 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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