rs258006773 SNP Detail

Summary

• ID
  rs258006773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4564367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGCTT TAGCCCCTGG
  TGACGGTCCC CAGACCGCTA AGTAACTTTC ACTTTCATCC AGAAAAAGCC ACCCGCTTCC
  TTGCTCCTAG GAAGCGGCTC TAATTGCCTC CCGACTCCTC AAGATCAGCT TCTTTGACTC
  CTGGGGTTCC CTTGTCCTGA CTCTGTGTCC CCACAGGACA GAACTCTTGC CCCCACCCAC
  K
  CCGCTCCGCC CACCACGCCT TTGTGCTGAG AAAGGAAAAA AAAAAGAATT ACAAACACGC
  ACTGTGATCA TGACTCGCCT GCCCCCAACT ATGGTCGCAC AGCCTCCGCC CTCCAGCGAG
  TGAGGATGTC TGAGGCTCTT ACACATTAAC GGCAGGAAGT GGAGTACCGA AGGGAGGCTG
  GGAATTTGAA CGCCTTCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352933304	MGP_WTSI_2_4480602	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258006773					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352933304	MGP_WTSI_2_4480602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4564367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	within coordinates
Frmd4a	FERM domain containing 4A	within coordinates
Rr1275	regulatory region 1275	1681 bp downstream
Rr367095	regulatory region 367095	150 bp upstream
Rr551084	regulatory region 551084	1397 bp distal
Rr551085	regulatory region 551085	within coordinates
Tssr15962	transcription start site region 15962	46 bp upstream
Tssr15963	transcription start site region 15963	89 bp upstream
Tssr15964	transcription start site region 15964	145 bp upstream
Tssr15965	transcription start site region 15965	186 bp upstream
Tssr15966	transcription start site region 15966	203 bp upstream
Tssr15967	transcription start site region 15967	322 bp upstream
Tssr15968	transcription start site region 15968	357 bp upstream
Tssr15969	transcription start site region 15969	375 bp upstream
Tssr15970	transcription start site region 15970	494 bp upstream
Tssr15971	transcription start site region 15971	562 bp upstream
Tssr22384	transcription start site region 22384	115 bp downstream