rs258010450 SNP Detail

Summary

• ID
  rs258010450
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86249246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCCAGCG GGCGGTGTTT
  TTCCCCCTTT AATCCGAATT CACGGGTTTT CCCTTCGCTT TAATGGCGGC CACAGGGACC
  AGCTCGCCCT CTCTGCTCGC CCATTGGCCG CCGCGAGGTC ACGTGGGCCG GGCTCCGTAG
  GGAGGGGGGA GAGAGAAGGC GGTGAGGGAG GGCAGGGAAG CTTTCGGAGC CCCGGGGACC
  S
  GGCGGCCAGC TGGTGGCTAC TAACATGGCG CCATCTGCTG GATGCCCCGG TTAAGATGAC
  CCGAGTCTTG GCCCTAGCTT TCTGCTGGCT GGGGAAAGTG CAGCAGCGCA GGAAGGTTCA
  CTTCAAAATC GAGAATTACT TGGAAATCAG TTCAAATTCT TTGGAAGAGA AAGTTGGCAA
  AAAAAAAAAA AAAAGAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384126889	MGP_WTSI_11_86171922	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258010450					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384126889	MGP_WTSI_11_86171922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86249246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3473	CpG island 3473	within coordinates
Gm38937	predicted gene, 38937	1565 bp downstream
Gm74255	predicted gene, 74255	128 bp upstream
Med13	mediator complex subunit 13	824 bp upstream
Rr402823	regulatory region 402823	within coordinates
Rr453539	regulatory region 453539	829 bp distal
Rr453540	regulatory region 453540	328 bp distal
Rr453541	regulatory region 453541	within coordinates
Rr453542	regulatory region 453542	25 bp proximal
Tssr109840	transcription start site region 109840	1035 bp upstream
Tssr109841	transcription start site region 109841	806 bp upstream
Tssr109842	transcription start site region 109842	498 bp upstream
Tssr109843	transcription start site region 109843	248 bp upstream
Tssr109844	transcription start site region 109844	226 bp upstream
Tssr109845	transcription start site region 109845	193 bp upstream
Tssr109846	transcription start site region 109846	161 bp upstream
Tssr109847	transcription start site region 109847	98 bp upstream