rs258013515 SNP Detail

Summary

• ID
  rs258013515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57367456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCCTCC CCAACACTTC
  ATTCCGCCCG CGCGCCTCCT TTTCTTGGTG ACACTCGGAG AGAGAAACGC AAGGTCAACG
  AGCGGCGCGG CTGCAAAGTT AAATCCTTAT TGGTCAATGC GCCCTAGCTG CGGCGGTCCG
  CTCTACCTAG GCGGGGCTTC CCGGTTGACC CGCCGCGGCC TCCTGTCCCG CAGCTCGCAG
  Y
  CCGCTAGGCA TTCTTAAAGG GGCCGCGCCC CAATTCAGAC TCTCTGAAGG CTGCTCTTTG
  CAGACCTGCC TGGAAAGGGA GTCGCGGACC AGTATCTCCC GCGCCACTAA AGATAACGAT
  CAGGAGGAGG GGCTCTGGAG GCGGGGCCTC AGCCGGCGGC TGTGGTTGCA CCTGCTGAAG
  TCCCGCCCAC AAGTTTCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398569744	MGP_WTSI_17_57199879	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258013515					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398569744	MGP_WTSI_17_57199879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57367456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	498 bp distal
Cpgi9391	CpG island 9391	within coordinates
Cpgi9392	CpG island 9392	1508 bp proximal
Crb3	crumbs family member 3	1127 bp upstream
Rr405393	regulatory region 405393	within coordinates
Rr529260	regulatory region 529260	1341 bp distal
Rr529261	regulatory region 529261	103 bp distal
Rr529262	regulatory region 529262	1285 bp proximal
Rr529263	regulatory region 529263	1854 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	593 bp upstream
Tssr145365	transcription start site region 145365	279 bp upstream
Tssr145366	transcription start site region 145366	1804 bp upstream
Tssr145367	transcription start site region 145367	1861 bp upstream
Tssr145368	transcription start site region 145368	1897 bp upstream
Tssr148875	transcription start site region 148875	599 bp upstream
Tssr148876	transcription start site region 148876	1533 bp downstream