rs258015443 SNP Detail

Summary

• ID
  rs258015443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114954273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAATCAT AATCGGGCTT
  ATTACTCCCC TCTGCCCACC CTTCCCCTTC TGCATTTCTA TTTCTTCCTT GAACTGAGTA
  CACCCATCTT GCCAACTATT TTCCTTCTGG AAATTTATTA CCCAATTTTT ACGTTCCCAT
  AGCTTGACAC AGAACGTGAA ATGTCCTTTC CTTCCGTATT TGTTACTATT TTGGCAAATG
  Y
  ATTTGGCACA AGAATCTCCT CGGTGAGACT TCCTACAGCA GGTGACCCAG CCACGCCCCC
  CGCCACTCTC AACTGAAAGG TAAGGTTTTT ACTAAGATTA CAGTTGGAAC ACAGTTACGG
  TTAACCCGGA CTGAGCGCCC AGCGAGGGCC ACTTAAATCC ACGTACCCAC GCGACAACTA
  AGGCAGAGAT GTGTACCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324534394	CHEV_13_115607945	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258015443					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114954273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	4 bp proximal
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	434 bp upstream
Rr280966	regulatory region 280966	within coordinates
Rr404003	regulatory region 404003	342 bp upstream
Tssr121205	transcription start site region 121205	495 bp upstream