rs258021391 SNP Detail

Summary

• ID
  rs258021391
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7262190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCATAA TACAGCTAAT
  TTTTAAATTT TACTTTAGTG TGCTACAAAA ATTTGGGATC AAGCCATCCA TCAACTACTA
  CCAGGTAAGT TTACCTTTAT CTATCTAGTG TCTAGTGTGT GTCATTGGGG ACATTTGGCA
  GGATCCATCC ATCTGCAGGC TGCACTAGGG TTTTAAAGTG ACCCAGCATA AACCTCCTTG
  M
  AATGGGTTTT CCTTGGATTC TTTGTGTTTG CATATGAGCA TACACTATGA ATTGCTTAGG
  TCACTGGCTT GGAGGCACAG ACACTTGACC TCCAAGGCCT CAGCACAGGG CAGAGCACAA
  GTCTGAAAAA GTGCATCTAA CATCATGGAG TTGGAGGGGA AGCACATTGG TTCTTTGCTT
  TTCATGTAAA CTATGTGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss397554609	MGP_WTSI_17_7199140	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	C	A	C	C	C	C	C	C	C	C	A	C	A	A	A	C	A	C	A	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs258021391					SNP	A	A	A	A	C	C	A	C	C	C	C	C	C	C	C	A	C	A	A	A	C	A	C	A	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397554609	MGP_WTSI_17_7199140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7262190 () rs orientation: forward

Symbol	Name	Function Class
Gm49721	predicted gene, 49721	within coordinates
Rnaset2b	ribonuclease T2B	within coordinates
Rr521500	regulatory region 521500	802 bp proximal
Tssr146343	transcription start site region 146343	1526 bp upstream