rs258021521 SNP Detail

Summary

• ID
  rs258021521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGGGAGC ACACAGGTCT CAATCTTGTT TCTCATCCCC
  TTCTTTTGCG TCTGTTAAAC TGGGGCCACG GACTCTGCCG CCTTCCTAAG TGTGTACTCA
  Y
  GGTGCCTAAA ACCCACAGAG GCACTTTATA AACCTCGACA CACTGCATCC GTTTAATGGC
  GTCGAAAGGG AAGGGAACTG ATGTTTGGCC ACTGGAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730631	CHEV_11_69413006	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258021521					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490330 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	232 bp downstream
Gm72066	predicted gene, 72066	225 bp upstream
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	44 bp proximal
Rr450034	regulatory region 450034	85 bp proximal
Rr450035	regulatory region 450035	537 bp proximal
Tssr3544	transcription start site region 3544	1191 bp downstream
Tssr102487	transcription start site region 102487	509 bp upstream
Tssr102488	transcription start site region 102488	1659 bp upstream
Tssr102489	transcription start site region 102489	1734 bp upstream
Tssr108712	transcription start site region 108712	503 bp downstream
Tssr108713	transcription start site region 108713	648 bp downstream
Tssr108714	transcription start site region 108714	730 bp downstream
Tssr108715	transcription start site region 108715	743 bp downstream
Tssr108716	transcription start site region 108716	1055 bp downstream
Tssr108717	transcription start site region 108717	1080 bp downstream
Tssr108718	transcription start site region 108718	1139 bp downstream
Tssr108719	transcription start site region 108719	1150 bp downstream
Tssr108720	transcription start site region 108720	1154 bp downstream
Tssr108721	transcription start site region 108721	1168 bp downstream
Tssr108722	transcription start site region 108722	1249 bp downstream
Tssr108723	transcription start site region 108723	1277 bp downstream
Tssr108724	transcription start site region 108724	1330 bp downstream
Tssr108725	transcription start site region 108725	1354 bp downstream
Tssr108726	transcription start site region 108726	1449 bp downstream
Tssr108727	transcription start site region 108727	1471 bp downstream
Tssr108728	transcription start site region 108728	1515 bp downstream
Tssr108729	transcription start site region 108729	1602 bp downstream
Tssr108730	transcription start site region 108730	1634 bp downstream
Tssr108731	transcription start site region 108731	1665 bp downstream
Tssr108732	transcription start site region 108732	1726 bp downstream