rs258027285 SNP Detail

Summary

• ID
  rs258027285
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCCCTC GATGGCGGAC
  GCCGACGCCA GGCAGCCCCG GGTGGAAGGG AGGAGGAGGA GGAGGAGAGA GAGACTTAGA
  GTCAGACAGA GGGACAGAGA GAGAGACTTA GACACAGAGA CAGAGAGACA GAGAGAGGCT
  CTGTCCCTGC ACTCCTACAG GTACAACCTG GAGCAGCGGA CGCGGACCTG AACCCCCGTC
  T
  GCCCGGGGAC GCCGCCGCCA CGGCCACACC GCTCGTCTGG AACCACGGCT GGCCTTCGGG
  TCCCAGATCC GTCCCCACGA GGCAGAGAAC CGGGGGTGCA CTTGCGCGTT TTTCGCCACC
  GGGTGGCCCC GGAGATCGGC GCTGGGCCCT AGACGCACTA CAGCTCCCAT GAGCGCCTGG
  GCCCGACTTC CTGTCCAAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	C57BL/6J	C57L/J
ss370610661	MGP_WTSI_7_7230841	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	C57BL/6J	C57L/J
rs258027285					SNP	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610661	MGP_WTSI_7_7230841	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	within coordinates
Rr642334	regulatory region 642334	within coordinates
Rr642335	regulatory region 642335	57 bp proximal
Rr642336	regulatory region 642336	110 bp proximal
Rr642337	regulatory region 642337	371 bp proximal
Tssr64464	transcription start site region 64464	130 bp downstream
Tssr70610	transcription start site region 70610	85 bp upstream
Tssr70611	transcription start site region 70611	44 bp upstream