rs258036250 SNP Detail

Summary

• ID
  rs258036250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108885838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCCTC CTGGCTTGCC
  TGCCCACTTG CGTTGCAGCC CAGTGTCCCC ACAGCTAACC CATGTCCTTT CTCCTTCCAG
  GAGCCAGCCA GCCTCCATAC AACCCGACCT ACATGGATTC CCTAAAGACA ATTCCCTGAA
  CCTGCCCCCA GCCTCTTTGG CTGCCATTTA TGTCGTGTGT GAGTGAGTGA TACGCAGAGT
  Y
  CTTTACTGCT GTCTGTGGTG TGTGTGCCTT GTCTAGACAT GTGGCTTCCT CTGCTGTTGA
  CCAGGTAGGC GCAAGTCTTA CCAGTGTGGG TCGGGACCAA CCTGTTTTCT TCCTCACTTG
  AAATTGTACT TTCTGAAATT TCAAGCAAAT TAAAAACAAT AAGGTAGGAG GTATTTCCCA
  CGTCACCCCA AGGTGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877896	MGP_WTSI_9_108959284	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258036250					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877896	MGP_WTSI_9_108959284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108885838 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	1163 bp downstream
Rr368866	regulatory region 368866	1691 bp downstream
Rr686954	regulatory region 686954	1897 bp distal
Rr686955	regulatory region 686955	1148 bp distal
Rr686956	regulatory region 686956	816 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	1162 bp downstream
Tssr87207	transcription start site region 87207	1899 bp downstream
Tssr87208	transcription start site region 87208	1869 bp downstream
Tssr87209	transcription start site region 87209	1780 bp downstream
Tssr87210	transcription start site region 87210	1730 bp downstream
Tssr87211	transcription start site region 87211	1656 bp downstream
Tssr87212	transcription start site region 87212	1137 bp downstream
Tssr87213	transcription start site region 87213	779 bp downstream
Tssr87214	transcription start site region 87214	707 bp downstream
Tssr87215	transcription start site region 87215	476 bp downstream
Tssr87216	transcription start site region 87216	423 bp downstream
Tssr87217	transcription start site region 87217	350 bp downstream
Tssr87218	transcription start site region 87218	50 bp downstream
Tssr87219	transcription start site region 87219	168 bp upstream
Tssr87220	transcription start site region 87220	254 bp upstream
Tssr87221	transcription start site region 87221	478 bp upstream
Tssr87222	transcription start site region 87222	525 bp upstream
Tssr91570	transcription start site region 91570	1974 bp upstream
Tssr91571	transcription start site region 91571	945 bp downstream
Tssr91572	transcription start site region 91572	1466 bp downstream
Tssr91573	transcription start site region 91573	1623 bp downstream
Tssr91574	transcription start site region 91574	1853 bp downstream
Tssr91575	transcription start site region 91575	1904 bp downstream
Tssr91576	transcription start site region 91576	1989 bp downstream