rs258036657 SNP Detail

Summary

• ID
  rs258036657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGCTGC GGGAGGGCGG
  TGTCGCCGCG TGAGGACCGT CCTCGGCAGT GCAGGGATGG GCGGAGAGAT GAACAGTCCC
  GAGAAGTATT ATGGGCTGCA CTGGGGGATT TGGAGGGCCG GGGAGGGCGG TATGAGGACC
  GCGGGCGGCG ACACGGCTAA GGCGGCGCCG AAAGCAGCAG CATCCGCAAC GCGTCCACCC
  K
  CCCAGTCCCG GTTTGTTCAG TCAGAGCAGC AGCAGCCGGG CGTACGGGGA GGGAAGGGGA
  GAAGGAGCCT TTACCTGGCT CTGCCGCGAC CGGTCCCAGG CCCAAGGTTC CGCTTCCCAC
  TTAGCGTTCT CCTCCCCGCC ACCCTCTTCT ACGCAGTTCG GCCCCCCAGT TCCCTAAGGA
  GACTCCGCCA ACTCCGCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452111	MGP_WTSI_1_133423735	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258036657					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452111	MGP_WTSI_1_133423735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454896 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi711	CpG island 711			within coordinates
Fam72a	family with sequence similarity 72, member A			mRNA-UTR
Gm70877	predicted gene, 70877			within coordinates
Rr396286	regulatory region 396286			124 bp upstream
Rr396287	regulatory region 396287			435 bp upstream
Rr418129	regulatory region 418129			524 bp distal
Rr418130	regulatory region 418130			909 bp distal
Rr418131	regulatory region 418131			within coordinates
Rr418132	regulatory region 418132			179 bp proximal
Rr418133	regulatory region 418133			976 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
Tssr8627	transcription start site region 8627			1879 bp downstream
Tssr8628	transcription start site region 8628			1705 bp downstream
Tssr8629	transcription start site region 8629			700 bp upstream
Tssr8630	transcription start site region 8630			743 bp upstream
Tssr8631	transcription start site region 8631			822 bp upstream
Tssr8632	transcription start site region 8632			1203 bp upstream
Tssr13589	transcription start site region 13589			1996 bp upstream
Tssr13590	transcription start site region 13590			1926 bp upstream
Tssr13591	transcription start site region 13591			1899 bp upstream
Tssr13592	transcription start site region 13592			1807 bp upstream
Tssr13593	transcription start site region 13593			1730 bp upstream
Tssr13594	transcription start site region 13594			1620 bp upstream
Tssr13595	transcription start site region 13595			1573 bp upstream
Tssr13596	transcription start site region 13596			1540 bp upstream
Tssr13597	transcription start site region 13597			1311 bp upstream
Tssr13598	transcription start site region 13598			610 bp upstream
Tssr13599	transcription start site region 13599			568 bp upstream
Tssr13600	transcription start site region 13600			413 bp upstream
Tssr13601	transcription start site region 13601			108 bp downstream
Tssr13602	transcription start site region 13602			144 bp downstream
Tssr13603	transcription start site region 13603			365 bp downstream