rs258037428 SNP Detail

Summary

• ID
  rs258037428
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCATCCAT GGAAAGGTAG AAGGAGAGGA TCAGCTCCTA
  AAAGTTGTCC TCTGACCGCT GCATGTACAG CACAACACAG CACAGCACAT GTGAGTGTGC
  G
  TACATCATGC ACACACATCA TACATACATC ATGTGCACAT ATCATGCACA CACATCATGT
  GCACACATCA TACACACATC ATGCACACAC ATCATGTGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320607404	CHEV_2_164892763	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258037428					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909183 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr52793	regulatory region 52793	1840 bp proximal
Tssr21713	transcription start site region 21713	1544 bp downstream
Tssr21714	transcription start site region 21714	579 bp downstream
Tssr21715	transcription start site region 21715	545 bp downstream
Tssr21716	transcription start site region 21716	495 bp downstream
Tssr21717	transcription start site region 21717	402 bp downstream
Tssr21718	transcription start site region 21718	355 bp downstream
Tssr21719	transcription start site region 21719	261 bp downstream
Tssr21720	transcription start site region 21720	68 bp downstream
Tssr21721	transcription start site region 21721	23 bp downstream
Tssr21722	transcription start site region 21722	836 bp upstream
Tssr27603	transcription start site region 27603	1879 bp upstream