rs258047441 SNP Detail

Summary

• ID
  rs258047441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCCTATT TCTTCGTTTT
  TATAAACCAG TCACAGTCAC ACAATCCAGT GAAGGAAATT CAGAATTTAA AATTGCCATG
  CTCAAGCCAG GCGTGGTAGT GCATGCCTTT AATCCCAGCA CTCGAGGGGC AGAGGCAGTC
  GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ATAAAGTGAG TTCCAGGACA GCCAGGGCTA
  Y
  ACAGAGAAAC CCTGTCTCGA AAAAAAAAAA AATGCCATGT GCGGCGGCAC ATAATTTCAC
  TCCTAGCACT CCAGAGGAAG CGGCAGGTGG ACCTCTGAGT TTAAGGCCAA TCTGGTTTAC
  ATAGTGAGTC CTGGACCACC CAAGGTTAGA CAGGGAGAGA GACCTCCCCT CCGAAAACAA
  AATACAGCCA ACCACCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940623	CHEV_9_44115248	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258047441					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	1091 bp distal
Hinfp	histone H4 transcription factor	1494 bp upstream
Rr195005	regulatory region 195005	539 bp proximal
Rr206299	regulatory region 206299	861 bp distal
Rr368726	regulatory region 368726	1070 bp downstream
Tssr89139	transcription start site region 89139	1477 bp upstream