rs258052188 SNP Detail

Summary

• ID
  rs258052188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36415321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AGACAAAACA
  AACAAATCGG TGCTGACATC GCAGATGTAG CCAAGGATGG GTGGCCCGAG CAATAGCCGG
  AGCTCCAGGT CTGTGTGCTC AGAAGCCACC TCCATTTTTG TCGGAGGTGG GGGTCAAAAG
  GAAAGGATGT GAAGCTAGAG GGTCTTCTCT GAGGTCGACA GTAAGACCAG AGACGGTTCG
  Y
  GGTGTAAGAG AAGGGACCGT ACAAACAAAT CTGCCATAAG CTTGAACTTT GGTAGAGGCC
  CTAGACAGAC CAGCAAGGTG TTAAAGGAGC TGTCGGCCTT CATCCCCCTC CCCCGAAAAA
  AAACCCCACC TTCTTTTCCT GTCTCTAAAG GGACTCTTGG AGGCTCTGTT TCGTTGTGAT
  CAGGGCCCTT TACGTGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400274454	MGP_WTSI_18_36441922	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258052188					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400274454	MGP_WTSI_18_36441922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36415321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9864	CpG island 9864	285 bp distal
Gm58393	predicted gene, 58393	1287 bp upstream
Pura	purine rich element binding protein A	within coordinates
Rr536081	regulatory region 536081	1298 bp distal
Rr536082	regulatory region 536082	1161 bp distal
Rr536083	regulatory region 536083	within coordinates
Tssr150596	transcription start site region 150596	1701 bp downstream
Tssr150597	transcription start site region 150597	1117 bp downstream
Tssr150598	transcription start site region 150598	882 bp downstream
Tssr150599	transcription start site region 150599	866 bp downstream
Tssr150600	transcription start site region 150600	809 bp downstream
Tssr150601	transcription start site region 150601	764 bp downstream
Tssr150602	transcription start site region 150602	750 bp downstream
Tssr152929	transcription start site region 152929	1279 bp upstream