rs258062213 SNP Detail

Summary

• ID
  rs258062213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACAGAGG TATTTTGCAT
  GTATGATGTC TCTGCACCAC CTGTGTGCCT GGTGCCCAGG GAGGCTAGAA GAAAGTGCTG
  GCTCTACTGG GACTTAAATT ATAGCTGCCT GTGAGCTACT TTGCATGCAG ATGCTGGGAA
  CTGAACCTGG GTCCTCTGCA GGAGGAGCGA GTGCTCTTAA CTGTGGAGCC ATCTCTCCAG
  Y
  TCCCGGTTGC TGTTGTTCCT AGCAGTTCTT TGTTTTCCCA TTAACCTTTA CAGCTGTGTT
  GAACAGCAGC ACCTTCTAGC TCCTGTGAAA CTCCTCAGAG GCAAGTTGCA GCCATCCACA
  CCTCCGTAGC CTGTGTGTGT ACCTCAGTGC CTACAGTCTG CCATGGGCGA TTGTCTCTGG
  TGCAGCTGAC CAGTCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645781	CHEV_18_61954202	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258062213					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927619 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	305 bp downstream
Rr346544	regulatory region 346544	1419 bp distal
Rr346545	regulatory region 346545	219 bp distal
Rr351728	regulatory region 351728	1474 bp distal
Rr356351	regulatory region 356351	411 bp distal