rs258080149 SNP Detail

Summary

• ID
  rs258080149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCGACCA CATCTGTGTT
  CTTGGTGCCT TCCGCCATGT GTACAGAGGA ATGTAAAGGG AAGGCAGTGA GTTAGAGGGT
  TGCATGTTCG GGGAAACTAG GACCATAGCA ACTGCACATT AGGGGACAGG TGGCACCCAG
  CTATCATGTG CATGGATCTG CAGACCAGGG GCAGCGCATG ATGCCTGGGC TCGTCTCTCA
  R
  CCGCTCTCTT CCCCCTCTAG CCTGAATCTC CTGGAAAACT GGGACACTCT GGGTTCAACC
  GTTAGTCAGC TGCAGGAACG GCTGGGCCCA TTGACTCGGG ACTTCTGGGA TAACCTGGAG
  AAAGAAACAG ATTGGGTGAG ACAGGAGATG AACAAGGACC TAGAGGAAGT GAAACAGAAG
  GTGCAGCCCT ACCTGGACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451218	MGP_WTSI_9_46037867	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258080149					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451218	MGP_WTSI_9_46037867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141082 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	162 bp proximal
Gm67994	predicted gene, 67994	1487 bp downstream
Rr195182	regulatory region 195182	882 bp distal
Rr195183	regulatory region 195183	82 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1410 bp downstream
Tssr84840	transcription start site region 84840	1070 bp downstream
Tssr84841	transcription start site region 84841	940 bp downstream
Tssr84842	transcription start site region 84842	838 bp downstream
Tssr84843	transcription start site region 84843	804 bp downstream
Tssr84844	transcription start site region 84844	630 bp downstream
Tssr84845	transcription start site region 84845	593 bp downstream
Tssr84846	transcription start site region 84846	538 bp downstream
Tssr84847	transcription start site region 84847	38 bp upstream
Tssr84848	transcription start site region 84848	125 bp upstream
Tssr84849	transcription start site region 84849	217 bp upstream
Tssr84850	transcription start site region 84850	257 bp upstream
Tssr84851	transcription start site region 84851	301 bp upstream
Tssr84852	transcription start site region 84852	320 bp upstream
Tssr84853	transcription start site region 84853	418 bp upstream
Tssr84854	transcription start site region 84854	448 bp upstream
Tssr84855	transcription start site region 84855	467 bp upstream
Tssr84856	transcription start site region 84856	483 bp upstream
Tssr84857	transcription start site region 84857	601 bp upstream
Tssr84858	transcription start site region 84858	620 bp upstream
Tssr89313	transcription start site region 89313	150 bp downstream
Tssr89314	transcription start site region 89314	210 bp downstream
Tssr89315	transcription start site region 89315	224 bp downstream
Tssr89316	transcription start site region 89316	252 bp downstream
Tssr89317	transcription start site region 89317	264 bp downstream
Tssr89318	transcription start site region 89318	286 bp downstream
Tssr89319	transcription start site region 89319	300 bp downstream
Tssr89320	transcription start site region 89320	309 bp downstream
Tssr89321	transcription start site region 89321	331 bp downstream
Tssr89322	transcription start site region 89322	377 bp downstream
Tssr89323	transcription start site region 89323	442 bp downstream
Tssr89324	transcription start site region 89324	492 bp downstream
Tssr89325	transcription start site region 89325	516 bp downstream
Tssr89326	transcription start site region 89326	556 bp downstream
Tssr89327	transcription start site region 89327	677 bp downstream