rs258081297 SNP Detail

Summary

• ID
  rs258081297
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68923797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCTTCAG TAGACATTTG
  TTGCCAATGA GAATGTCTTA TTAGCCAGGC AGTAGTTGCA CTTTAATTCC AGGACTTGGG
  AGGCAGCAGC AGGCAGATCT CAGAGCTTGA GACCAGCCTG GTTTACAGAC TGAGTTCCAG
  GACAGTCAGG GCTACACTGG ACAATCCCTG TCTCAAAAAC AAAACGGGGT GGGGGGGGGG
  T
  GGGGGGGTGG GGGGGGCTGT CTTATTTGCA GAACAGCTGA ATTTACTAAG TTGAATACTA
  ATGTTCATAC TTAATCAAAC CCACTATCTT TATATTAGCC TTTGCGTGAC ATGCTTTTAT
  TTAGTGTTTA ATATTTCATG TTGGTTTTAC ATATGAAATG TTTTACATCT TTATTTAATG
  TTTGTAGTTA AATAGAGTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ	SWR/J
ss358313480	MGP_WTSI_3_68820386	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ	SWR/J
rs258081297					SNP	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313480	MGP_WTSI_3_68820386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68923797 () rs orientation: forward

Symbol	Name	Function Class
Rr578111	regulatory region 578111	624 bp proximal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29518	transcription start site region 29518	356 bp downstream
Tssr29519	transcription start site region 29519	210 bp upstream
Tssr29520	transcription start site region 29520	228 bp upstream