rs258088430 SNP Detail

Summary

• ID
  rs258088430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78357368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggttttcaa tgcctggata agaaaattat
  gtaaatagtc atgcgtctct tcattttgac catcgtgaat ctcagtcaaa ttctaggttc
  attaataTTA TTTTAGTgcc aggcagtggt ggcacacacc tttaatccca gcacttgtgg
  R
  gcagaggcag gcagatttct gagttcgagg ccagcctggt ctacagagtg agatccagga
  cagccagggc tacacagaga aaccctgtct cgaaacaaaa caaaacaaaa caaaaaatac
  ccaaaaacaa caaaacaaaa caaaataCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323016289	CHEV_9_78297893	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258088430					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78357368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	1162 bp distal
Gm17324	predicted gene, 17324	1300 bp upstream
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	1749 bp downstream
Rr683554	regulatory region 683554	1868 bp distal
Rr683555	regulatory region 683555	810 bp distal
Tssr86287	transcription start site region 86287	1858 bp downstream