rs258089146 SNP Detail

Summary

• ID
  rs258089146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9617653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GTTTCATTGT CTTATTTTGT
  Y
  CTTAATAAAC TTATCTTTGC ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319630701	CHEV_1_9537509	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258089146					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9617653 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	520 bp upstream
Cpgi23	CpG island 23	1189 bp distal
Rr407599	regulatory region 407599	1846 bp distal
Rr407600	regulatory region 407600	881 bp distal
Rr407601	regulatory region 407601	1268 bp distal
Rr407602	regulatory region 407602	93 bp proximal
Rr407603	regulatory region 407603	531 bp proximal
Rr407604	regulatory region 407604	1738 bp proximal
Rrs1	ribosome biogenesis regulator 1	mRNA-UTR
Tssr5895	transcription start site region 5895	1949 bp downstream
Tssr5896	transcription start site region 5896	1933 bp downstream
Tssr5897	transcription start site region 5897	1440 bp downstream
Tssr5898	transcription start site region 5898	621 bp upstream
Tssr5899	transcription start site region 5899	686 bp upstream