rs258091291 SNP Detail

Summary

• ID
  rs258091291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGAAAC CTGCATCCAG
  GCCCAACCTG TAAACACCCC AGCGAAGAAC TCATACAGCC GCGCCCAGGC CAACAAGCAT
  GTCTGGTTAG GAGAGACTAT CAATGGTGGC AGCCAGGTAC GTAATTCTCC AAGTATTCCT
  CATCTTCCAA AATATGATTT TCTTAGCATC ATTTGCTTTT TAATTACTTG GGCTTTAACC
  Y
  TTTACCCTCA TGAGCTTATT AAAAGAAACT ACTCTTTTCA CAAATTCCAA TTCTATCCTA
  GATCACATAT TAAAAGATTG GACTCAGCCA CCTAATTCAA CACTATTATT CAAATTTGAC
  TTATGGGTCA TCATTGGAGA CATAGCTAAT GCGATTTCAT GTAAAGGTGC ACCGGCCGGC
  CCAGAGCCCC CCAGCTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230134	MGP_WTSI_6_4488895	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258091291					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230134	MGP_WTSI_6_4488895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538895 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	Intron
Tssr1769	transcription start site region 1769	915 bp downstream
Tssr1770	transcription start site region 1770	227 bp downstream
Tssr54726	transcription start site region 54726	1097 bp downstream
Tssr54727	transcription start site region 54727	1016 bp downstream
Tssr54728	transcription start site region 54728	939 bp downstream
Tssr54729	transcription start site region 54729	885 bp downstream
Tssr54730	transcription start site region 54730	250 bp downstream
Tssr54731	transcription start site region 54731	205 bp downstream
Tssr54732	transcription start site region 54732	118 bp downstream
Tssr54733	transcription start site region 54733	572 bp upstream
Tssr54734	transcription start site region 54734	583 bp upstream
Tssr54735	transcription start site region 54735	597 bp upstream
Tssr54736	transcription start site region 54736	621 bp upstream
Tssr54737	transcription start site region 54737	643 bp upstream
Tssr54738	transcription start site region 54738	681 bp upstream
Tssr54739	transcription start site region 54739	696 bp upstream
Tssr54740	transcription start site region 54740	760 bp upstream
Tssr54741	transcription start site region 54741	1111 bp upstream
Tssr54742	transcription start site region 54742	1633 bp upstream
Tssr54743	transcription start site region 54743	1648 bp upstream
Tssr54744	transcription start site region 54744	1679 bp upstream
Tssr54745	transcription start site region 54745	1691 bp upstream
Tssr54746	transcription start site region 54746	1704 bp upstream
Tssr54747	transcription start site region 54747	1735 bp upstream
Tssr54748	transcription start site region 54748	1779 bp upstream
Tssr54749	transcription start site region 54749	1948 bp upstream
Tssr54750	transcription start site region 54750	1961 bp upstream
Tssr54751	transcription start site region 54751	1969 bp upstream
Tssr59718	transcription start site region 59718	1826 bp downstream
Tssr59719	transcription start site region 59719	1894 bp downstream