rs258099820 SNP Detail

Summary

• ID
  rs258099820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGTCTA AGGAGTCCGA
  GGCAGCCCCC AGCAGCTGCT GCTGTCACTG CCGCCACCTC ATATTTGAGA AGTCAGGGTC
  TGCAATTGCT TGACAGTGTG CGGAAAACCT CCCATCCTTA TGTAGCTGAC AGGGGCTTTT
  CGCGGAGGAG AAAGTCACTG AATCCTGTCA GTGTAGGTCA CCTCCAGCTG CCTGACAAAA
  Y
  CAGCCCATGA ACCCCATGGA AGCCAACCCC AACTGAAGCT GAGATAATCA GACCAGGAAG
  TGAAAATGAC ATTCAAACTA AATTATTTAA AACAAGGCAT ACCTCTCCCC AACTCAGTCT
  AAAGACACAA TTTCATTTTG AGAATGTTTA CAGCCCATTT AATTAATCAG TGAACTAAAA
  GTCATAGAAA TTGGATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857652	MGP_WTSI_15_3229629	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258099820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857652	MGP_WTSI_15_3229629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309111 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	441 bp downstream
Rr498566	regulatory region 498566	1670 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	369 bp downstream
Tssr130397	transcription start site region 130397	499 bp downstream
Tssr130398	transcription start site region 130398	446 bp downstream
Tssr130399	transcription start site region 130399	357 bp downstream
Tssr130400	transcription start site region 130400	333 bp downstream
Tssr130401	transcription start site region 130401	325 bp downstream
Tssr130402	transcription start site region 130402	261 bp downstream
Tssr130403	transcription start site region 130403	214 bp downstream
Tssr130404	transcription start site region 130404	172 bp downstream
Tssr130405	transcription start site region 130405	154 bp downstream
Tssr130406	transcription start site region 130406	128 bp downstream
Tssr130407	transcription start site region 130407	92 bp downstream
Tssr130408	transcription start site region 130408	62 bp downstream
Tssr130409	transcription start site region 130409	45 bp downstream
Tssr130410	transcription start site region 130410	19 bp downstream
Tssr130411	transcription start site region 130411	17 bp upstream
Tssr130412	transcription start site region 130412	92 bp upstream
Tssr130413	transcription start site region 130413	345 bp upstream
Tssr130414	transcription start site region 130414	393 bp upstream
Tssr130415	transcription start site region 130415	467 bp upstream
Tssr130416	transcription start site region 130416	764 bp upstream
Tssr133563	transcription start site region 133563	392 bp upstream
Tssr133564	transcription start site region 133564	361 bp upstream
Tssr133565	transcription start site region 133565	317 bp upstream
Tssr133566	transcription start site region 133566	305 bp upstream
Tssr133567	transcription start site region 133567	54 bp upstream
Tssr133568	transcription start site region 133568	4 bp downstream