rs258100823 SNP Detail

Summary

• ID
  rs258100823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78458314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCATTT GTGTTTTTAG
  TTGTTTATTG GACTTTTGGG TTTCCTATTA CACAAGTTAC TATTTGTGTA TTTGTCCATT
  TCTCTACTGG AGTATTTTTT CCCCTCATAT TTATTTGGAG AAGTTCGGTG TTTGATTTTT
  CAAGTGTGAA TTGCTATAAC CGTTTCATAG TTCATTTCCA GTATGTGGAA TTATTTTTTT
  W
  GAAGCTGTGA TATTTATAAA GGTTTATTTG TATGTGGTCA ACTTTAATTT TTCTTCCCTA
  ATGATTGATA CTCTTTGAGT GATTCTTTCT TAAGCATTCC TATGCAATTT CACAAAGATA
  TTCTACAAAG TGTGTACAGT TTCTGTCTAC AGACAGTGAC CTTGATACAC AGAGTGGATT
  TTAGATGACA AAGGGGCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394657273	MGP_WTSI_15_78404544	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258100823					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394657273	MGP_WTSI_15_78404544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78458314 () rs orientation: forward

Symbol	Name	Function Class
Gm36738	predicted gene, 36738	297 bp downstream
Rac2	Rac family small GTPase 2	1331 bp upstream
Rr307919	regulatory region 307919	687 bp proximal
Rr312023	regulatory region 312023	913 bp distal
Rr404481	regulatory region 404481	1160 bp downstream
Tssr135251	transcription start site region 135251	1439 bp upstream
Tssr135252	transcription start site region 135252	1424 bp upstream
Tssr135253	transcription start site region 135253	1364 bp upstream
Tssr135254	transcription start site region 135254	1324 bp upstream
Tssr135255	transcription start site region 135255	910 bp upstream
Tssr135256	transcription start site region 135256	885 bp upstream