rs258102440 SNP Detail

Summary

• ID
  rs258102440
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99238975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGGCCA GCTGGATCAG
  ACCTGTACCC ATCTCTTCCA CTCTAGGAAC AGTACCCACT AAAGTTCCAC CGTGTGTATC
  CTTATCCACA AGCGTTTGGC CCCCTCGACC CAAATACATA TACTCCTGTC TACAAAGCTT
  TCCTGCTGAG TCACACATTA GTGCTATGGG ATAAACCGAA CCTTCTCTCC CAAAATGCAC
  S
  TGTTCTGTGT CCCAGAACCT CAGAATGTGA CTGCATTAGA GAACATCTTG ACAGATCTAA
  GTTTAAATAA GCTCATTAGA ATGGATTTGA ATGCCTTGAT ACTCTTGTAT GCAAAATAAA
  CACTTGGGCA CAGGTACACA GAGGGAAGTC AGAAGTCAGC CGCGGGCAGA AGAGAGAGAG
  AGATAGCAGA CTCAGAATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135605	CHEV_9_99257341	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258102440					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99238975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	705 bp proximal
Esyt3	extended synaptotagmin-like protein 3	within coordinates
Rr206935	regulatory region 206935	425 bp proximal
Tssr91051	transcription start site region 91051	1596 bp downstream