rs258104377 SNP Detail

Summary

• ID
  rs258104377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAATAAA ATAAAATATG
  TTTTTATAAT TTAAGAAAAG GCATGGTGGT ACAAGTCTTT AAACACAGCC CTCAGGAGAC
  AGATACAGAC AGATCTCTGA GTTTTAGATG TGCCTATTAT TAAAAATAAT AAAAGTAAAT
  ATATATTTTT TAAAAATCGA GACAGGAGAT GGGGAGATGG CTAAGTGGTT AAGAGTGGTA
  Y
  GTGTGTCCCA GGACAACTAG AGCTGTACAC AGTGAGCTCT TGTCTCAAAA AAAAAAAAAA
  AAAAAAATCT AGAGAGAAGG CCAAATCCAA ACCAAAGCTT GAACAAGTAA ACTCAAGGTC
  ATGACAGTAA TACAAACCAA GGAAGGCACT GGAAACAGGA AAGCCACGGA GAATACCATG
  GACACTGATG CTGGTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	SWR/J
ss382237241	MGP_WTSI_11_3073284	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	SWR/J
rs258104377					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237241	MGP_WTSI_11_3073284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	700 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	831 bp distal
Rr441482	regulatory region 441482	1999 bp distal
Rr441483	regulatory region 441483	1065 bp distal
Rr441484	regulatory region 441484	331 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	692 bp proximal
Rr441487	regulatory region 441487	1897 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	484 bp upstream
Tssr106449	transcription start site region 106449	38 bp downstream