rs258104976 SNP Detail

Summary

• ID
  rs258104976
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AAGATTTATT TGTTATTATG TGTAAGTACA CTGTAGCTGT CTTCAGACAC
  W
  CCAGGAGAGG TTATCAGATC TTATTACAGA TGGTTGTGGG CCACCATATG           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281276	MGP_WTSI_2_158209304	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	A	T	A	A	A	T	T	T	A	A	T	T	A	T	T	T	A	A	A	T	A	T	A	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258104976					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	A	T	A	A	A	T	T	T	A	A	T	T	A	T	T	T	A	A	A	T	A	T	A	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281276	MGP_WTSI_2_158209304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225488 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1394 bp downstream
Tssr21319	transcription start site region 21319	980 bp downstream
Tssr21320	transcription start site region 21320	944 bp downstream
Tssr21321	transcription start site region 21321	834 bp downstream
Tssr21322	transcription start site region 21322	711 bp downstream
Tssr21323	transcription start site region 21323	667 bp downstream
Tssr21324	transcription start site region 21324	629 bp downstream
Tssr21325	transcription start site region 21325	593 bp downstream
Tssr21326	transcription start site region 21326	569 bp downstream
Tssr21327	transcription start site region 21327	532 bp downstream
Tssr21328	transcription start site region 21328	486 bp downstream
Tssr21329	transcription start site region 21329	473 bp downstream
Tssr21330	transcription start site region 21330	384 bp downstream
Tssr21331	transcription start site region 21331	113 bp upstream
Tssr21332	transcription start site region 21332	250 bp upstream
Tssr21333	transcription start site region 21333	282 bp upstream
Tssr21334	transcription start site region 21334	1049 bp upstream
Tssr21335	transcription start site region 21335	1405 bp upstream
Tssr21336	transcription start site region 21336	1459 bp upstream
Tssr21337	transcription start site region 21337	1563 bp upstream
Tssr27228	transcription start site region 27228	350 bp upstream