rs258105878 SNP Detail

Summary

• ID
  rs258105878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102282358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCGGCG GGCGCGATTC
  ACAGGCGCCC GGACCACGTG GGAGCGAGGG GGATCCCCCT CCCCCTCCTC TGCCGCCTCT
  CCCCGCCCCC CACTCCCCCG CCCCTTCCCT TCCTCTTCCC CTTAAAGCGG CAACCGATCC
  TTCCAGGAGC GAGAGGTGGC CCCACGTTCT GTCCCGGACT TCGGGGCGGG GAGGAGGCTG
  R
  ACTGAGGGCG TCCGTGCGGG GGCGTCGGAG CGGGGGCGGG GGCAGAGACC AATTGTAGGG
  CTTGGGAGTA GCGGCGTGTC CGGTGCTCTT GTTGGGAGTG GGATGATCCC CTTGTACCCT
  CCTTTGGACT GTGTCTGATC TGAAAACTTC AGACAGCCCC CCACCGCAGT ACAGGCAGGG
  GTCAGGGTGA GTCCTTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355069595	MGP_WTSI_2_102292170	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	G	A	A	G	A	A	A	G	A	A	G	A	A	A	G	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258105878					SNP	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	G	A	A	G	A	A	A	G	A	A	G	A	A	A	G	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355069595	MGP_WTSI_2_102292170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102282358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	within coordinates
Fjx1	four jointed box 1	mRNA-UTR
Rr561694	regulatory region 561694	1253 bp distal
Rr561695	regulatory region 561695	669 bp distal
Rr561696	regulatory region 561696	476 bp proximal
Rr561697	regulatory region 561697	1430 bp proximal
Rr561698	regulatory region 561698	1557 bp proximal
Tssr25397	transcription start site region 25397	239 bp upstream
Tssr25398	transcription start site region 25398	198 bp upstream
Tssr25399	transcription start site region 25399	170 bp upstream