rs258111662 SNP Detail

Summary

• ID
  rs258111662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51740524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGTCTT TAGTAAATGA
  AGAAATGAGG CTGGAGAGAT GGCTCAGCAG TTAAGAGCAC TGACTGCTCT CCTAGGCGTC
  CTGAGTTCAG TTCCCAGCGA CCACAGTGAC TCACAGCCAT CTGAAATGGG ATACAGTGCT
  CTCTTCTGGT GTGTCTGAGA GAGCAACAGT GTACTCACAT AAGTAAATAC ATCTTTTTTT
  W
  TATATGAAGA AATAGTACTG TTATCTAAGA GTTATTGACA ATCAGCATAC AGCTGGCTCA
  AGCAGTCCCA TTCCTTAAGA AAGAACACAT AAAAAGCTCA GAAAAACTTA CATCCTGGGT
  ACCTATTTTA TGAACACAAG GAAGCTTTTA GGGATCTGAA GCCCACATGG CTGGTGATTA
  TGTCAAAAGA GCAAGTTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385973082	MGP_WTSI_12_52794728	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258111662					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385973082	MGP_WTSI_12_52794728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51740524 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Cpgi4590	CpG island 4590	1186 bp distal
Gm61171	predicted gene, 61171	1152 bp downstream
Rr256575	regulatory region 256575	1677 bp proximal
Rr265419	regulatory region 265419	523 bp distal
Rr403281	regulatory region 403281	1567 bp downstream
Strn3	striatin, calmodulin binding protein 3	1844 bp upstream
Tssr113422	transcription start site region 113422	1095 bp downstream
Tssr116250	transcription start site region 116250	1816 bp upstream
Tssr116251	transcription start site region 116251	1732 bp upstream
Tssr116252	transcription start site region 116252	1715 bp upstream
Tssr116253	transcription start site region 116253	1683 bp upstream
Tssr116254	transcription start site region 116254	1649 bp upstream