rs258113939 SNP Detail

Summary

• ID
  rs258113939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8476563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTTAG ATTTTCTGAA
  ATACAGGTTC TGTGAAACAT GAGGGAAGCC TCGTGTTGGT ATTTTGCTCA CCGTTGGGGT
  TGACGTCTCT TTAGATTTAC TTAGCTTACT GAAAGGCATT TTGGAAAAGT ACAAATGTAA
  GAAATTTTAT TTCCCAGTAG CTGGAGAGTA GATCTTAGAA TTTAATATAG CAGTGGGCTG
  R
  AAGCTGTACA GTAAAGACTT TATTTAGTTC TGTTTCTTTT CTTTACATGT ACAGAATTTT
  TAGACAAGGA TACTGTTTTA GTAGCTATTT TATACCCAAA TAATTAAATA TTATTTGGTA
  GAGTCAATCT GCACCGTATT AATTAGTTTT GAAAACAGAT TTTAAGTAAC TTCCAAGTGG
  CTTAGAATCT TCCTCATGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965681	MGP_WTSI_15_8397079	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258113939					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965681	MGP_WTSI_15_8397079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8476563 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	1216 bp downstream
Cpgi6933	CpG island 6933	1425 bp distal
Cpgi6934	CpG island 6934	859 bp distal
Gm63261	predicted gene, 63261	411 bp downstream
Rr369900	regulatory region 369900	1097 bp downstream
Rr499035	regulatory region 499035	1743 bp distal
Rr499036	regulatory region 499036	85 bp distal
Rr499037	regulatory region 499037	1604 bp distal
Rr499038	regulatory region 499038	522 bp distal
Tssr130594	transcription start site region 130594	1659 bp downstream
Tssr130595	transcription start site region 130595	1509 bp downstream
Tssr130596	transcription start site region 130596	885 bp downstream