rs258113994 SNP Detail

Summary

• ID
  rs258113994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52175040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAGCTGT GCCCCAACAC
  TTGGGGCTTA TCTCCTTTTG CGACTTCAAC ACCTCATCGC TTCCATGCTA AATAAAAAAG
  AAATAAGCAA GCAGTTAAAC TTAATTAGGG GTAATAAAGT GACAAAGTTG TCTCTAAGCG
  CTCCTCTGAC TCTTTAGCCA CCACACCGGT CCTCAGGAAA AAGTGAGATT CCCGTGGCAG
  R
  AAAGCGGTTC CCATAGAAGA CGTCGGATCT GAGGCGCTAC TGGAGCTAGG TGCTTGTGCA
  ACAGTGTTCT CCCCGCGCCG CACCTCTCTG GGGTTCAGGA TGAGTGGAGG CTGGGGGCTG
  GACCGAGCCG CAGAGGCTCG TCTTGCAGGT GTGCACAGGT AGGGTGGGAA GCGGTTACTC
  CGGAGCCGCA GAGCGACGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357951475	MGP_WTSI_3_52071541	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258113994					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357951475	MGP_WTSI_3_52071541	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52175040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13156	CpG island 13156	within coordinates
Foxo1	forkhead box O1	718 bp upstream
Gm20402	predicted gene 20402	816 bp downstream
Rr397666	regulatory region 397666	469 bp upstream
Rr576489	regulatory region 576489	604 bp distal
Rr576490	regulatory region 576490	227 bp proximal
Rr576491	regulatory region 576491	1306 bp proximal
Rr576492	regulatory region 576492	1806 bp proximal
Tssr29089	transcription start site region 29089	755 bp upstream
Tssr29090	transcription start site region 29090	774 bp upstream
Tssr29091	transcription start site region 29091	788 bp upstream