rs258117019 SNP Detail

Summary

• ID
  rs258117019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117690679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA CATTTTCTTA GAACCATCCT
  W
  ATGCCTTTTA GGTCCATCGC ATCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280570	CHEV_4_117506087	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258117019					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117690679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	1776 bp proximal
Gm17114	predicted gene 17114	1817 bp downstream
Rr406964	regulatory region 406964	1882 bp distal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	1561 bp upstream
Tssr38631	transcription start site region 38631	1753 bp upstream
Tssr38632	transcription start site region 38632	1796 bp upstream
Tssr38633	transcription start site region 38633	1822 bp upstream
Tssr38634	transcription start site region 38634	1856 bp upstream
Tssr38635	transcription start site region 38635	1905 bp upstream