rs258122935 SNP Detail

Summary

• ID
  rs258122935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCGGCC GGCGCGGCCG
  CGATCATCAC GGAGCCCGAG CACACGAAGG AGCGCGTCGT GAGTGGGGCG GGGGCGGTTG
  GCGGTTTTGG GGGGGAGGGG CGCCGTGGGG TCACGCCCCG CCCCTCCCCC ACGCCGCGCG
  GGGGAACTCC GGGGAGCCAG TCCCGGGCCG GGGGAGGGGG GGGACCGGGT GTGCGCGGCC
  R
  CGCGGGGGCT GTCAGTCCCT CCTTCCCCCC CGTGCGTCCA CCCCCCTCCT CCCCCCCACC
  CCCGCGTCTC TTCCTCCCCC CGAGGGGGGA GGGCAGTCCG CGGGGAGCAG CCGGCTCGCG
  CCGGGGCTTT GAGGTTCCCG CCGCTGCGGC TCGGGCGCCC CGGGGGGGCG GGGCCTGGCG
  CGCGGCGCGC ATGCTCCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363501337	MGP_WTSI_4_140258493	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	A	G	G	G	A	A	A	A	A	G	A	A	G	A	A	G	A	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs258122935					SNP	G	A	G	A	G	G	G	A	A	A	A	A	G	A	A	G	A	A	G	A	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501337	MGP_WTSI_4_140258493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	1308 bp upstream
Rcc2	regulator of chromosome condensation 2	Intron
Rr377298	regulatory region 377298	854 bp downstream
Rr603519	regulatory region 603519	1319 bp distal
Rr603520	regulatory region 603520	1095 bp distal
Rr603521	regulatory region 603521	1147 bp distal
Tssr39977	transcription start site region 39977	1965 bp downstream
Tssr39978	transcription start site region 39978	1141 bp downstream
Tssr39979	transcription start site region 39979	1115 bp downstream
Tssr39980	transcription start site region 39980	1069 bp downstream
Tssr39981	transcription start site region 39981	1057 bp downstream
Tssr39982	transcription start site region 39982	1030 bp downstream
Tssr39983	transcription start site region 39983	959 bp downstream
Tssr39984	transcription start site region 39984	739 bp downstream
Tssr39985	transcription start site region 39985	656 bp downstream
Tssr39986	transcription start site region 39986	616 bp downstream
Tssr39987	transcription start site region 39987	428 bp downstream
Tssr39988	transcription start site region 39988	380 bp downstream
Tssr39989	transcription start site region 39989	340 bp downstream
Tssr44273	transcription start site region 44273	1489 bp upstream
Tssr44274	transcription start site region 44274	130 bp upstream
Tssr44275	transcription start site region 44275	1088 bp downstream