rs258123111 SNP Detail

Summary

• ID
  rs258123111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115052394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCTTC CTGATCTCTG
  GACCTCACAT CCCAGGGGAT GCCCCGCTCT CCCATGGAAC CTCTCTTGTC AACTTTCCAC
  CTGGGTTCCT AGACAACCAG AGGTCAGAGT CTGGAAAAAA CTTCCCCTCC CTCCCAATCC
  CGAGACAAGG TGTACAGCAC CACGGATATT TAAGGCAGAG GTCAGAGCCA GATAAAGAAC
  Y
  TGTTGGCTCC TGGAATGGGT GGGAGGCAGA ACTGAACAAA GCCATAGGCC AGTTTTTCCC
  ACTAAGCCCC AGCTTGCTCG CTCTCTCTCT CTCTCCCTCT CTCTCTTTAA CTTCAGACCA
  ATACTAGGGC AAAATGGTTT TATCTTTTCC TCTTCCGCTA AATCGGGTTG AGAGGGTGGG
  AAGTTGTCGA TTTGGGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822742	MGP_WTSI_11_115022882	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258123111					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822742	MGP_WTSI_11_115022882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115052394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1352 bp proximal
Gm72084	predicted gene, 72084	677 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	1773 bp upstream
Rab37	RAB37, member RAS oncogene family	within coordinates
Rr369433	regulatory region 369433	1275 bp upstream
Rr403111	regulatory region 403111	1494 bp upstream
Rr459780	regulatory region 459780	1354 bp distal
Rr459781	regulatory region 459781	488 bp distal
Rr459782	regulatory region 459782	90 bp distal
Rr459783	regulatory region 459783	1283 bp proximal
Tssr3727	transcription start site region 3727	1788 bp upstream
Tssr105840	transcription start site region 105840	1765 bp upstream
Tssr105841	transcription start site region 105841	1806 bp upstream
Tssr105842	transcription start site region 105842	1832 bp upstream
Tssr105843	transcription start site region 105843	1849 bp upstream
Tssr105844	transcription start site region 105844	1870 bp upstream
Tssr111730	transcription start site region 111730	1561 bp downstream