rs258123453 SNP Detail

Summary

• ID
  rs258123453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAAGAG TATCCGGGAG
  ACCATGAAGG AACAAGGTGT CCTCAAAGAC TTTCTGAAGA ACCACAAGTA TGACCCTGGC
  CAGAAATACC ACTTTGGCAA GTTTGGTGAC TACAGTGTAC TCTATGAGCC CATGGCCTAT
  ATGGATGTAA GTCTTAACAC CCTTCTCCCA ACCCAGGGTG TCTCTGTCCC TGCTGCCAAA
  R
  GGTCTTCTGC CTGCCTTCCT GCCCTGGGTT GCACACATCC TTTTCCTAAC CTGCTATGGG
  CAACTGTTGG AGAGCCTGAG CTGGGGGGAG GGGGGGTTGC TTTCAGCTGA GCCCACGCAC
  AGACTGAGCA TCCGTTGCCG CTTGGGGCAG GTTTCGAGGG AAGACTTGGG CCAGTGGTTT
  TGGTGCGGTC TGGAGGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352939	MGP_WTSI_17_47865905	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258123453					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352939	MGP_WTSI_17_47865905	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039881 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1621 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1753 bp proximal
Tssr5147	transcription start site region 5147	205 bp downstream
Tssr5148	transcription start site region 5148	354 bp downstream
Tssr145004	transcription start site region 145004	214 bp downstream
Tssr145005	transcription start site region 145005	193 bp downstream
Tssr145006	transcription start site region 145006	164 bp downstream
Tssr145007	transcription start site region 145007	132 bp downstream
Tssr145008	transcription start site region 145008	111 bp downstream
Tssr145009	transcription start site region 145009	83 bp downstream
Tssr145010	transcription start site region 145010	294 bp upstream
Tssr145011	transcription start site region 145011	307 bp upstream
Tssr145012	transcription start site region 145012	319 bp upstream
Tssr145013	transcription start site region 145013	338 bp upstream
Tssr145014	transcription start site region 145014	1124 bp upstream
Tssr145015	transcription start site region 145015	1186 bp upstream
Tssr145016	transcription start site region 145016	1197 bp upstream
Tssr145017	transcription start site region 145017	1642 bp upstream
Tssr145018	transcription start site region 145018	1654 bp upstream
Tssr145019	transcription start site region 145019	1685 bp upstream
Tssr145020	transcription start site region 145020	1706 bp upstream
Tssr145021	transcription start site region 145021	1732 bp upstream
Tssr145022	transcription start site region 145022	1764 bp upstream
Tssr145023	transcription start site region 145023	1791 bp upstream
Tssr145024	transcription start site region 145024	1902 bp upstream
Tssr148459	transcription start site region 148459	155 bp upstream
Tssr148460	transcription start site region 148460	103 bp upstream
Tssr148461	transcription start site region 148461	91 bp upstream
Tssr148462	transcription start site region 148462	48 bp upstream
Tssr148463	transcription start site region 148463	322 bp downstream
Tssr148464	transcription start site region 148464	400 bp downstream
Tssr148465	transcription start site region 148465	1165 bp downstream
Tssr148466	transcription start site region 148466	1178 bp downstream
Tssr148467	transcription start site region 148467	1673 bp downstream
Tssr148468	transcription start site region 148468	1704 bp downstream
Tssr148469	transcription start site region 148469	1794 bp downstream