rs258124202 SNP Detail

Summary

• ID
  rs258124202
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:57525296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGACACGC TTGTACAGCA
  GTCATGTTGC CGGCTGAGCC ATCTCCCTGG GCCCTTTTTA CTTTTTAAAA AGACTTGAGA
  CAGGGTCTTA TTAAGTTACC CCTGCTATTC TCAAATTCAT GATCCTCCTG CCCCACACCT
  CCCAAGTGCT GGGATCCCAG GGCACACCTT ATACCTGGCT TACAAAGTGC TGGAGAGGGA
  K
  CCTGGAACTT TGCATGAACT AATTGAGCAC TCTCTTCTGA AGCCTAGCCA GTTCTAAGTT
  TCTGTAACAT CTGGGCCCTA AGACAATCCT TGCTGTCTCA GAGCCCAGGT CAACAGCAGG
  GAGATCTGAA GGCTAGAGGC AGCAGATGCC CCGAGGACTC ACCACGACCT TCAGTGTCTT
  CTTGACACCA TCACTGATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573099	MGP_WTSI_17_57357719	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258124202					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573099	MGP_WTSI_17_57357719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57525296 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C3	complement component 3			Intron
				Noncoding-Transcript-Variant
Gm65552	predicted gene, 65552			within coordinates
Mir6978	microRNA 6978			1068 bp upstream
Rr405394	regulatory region 405394			888 bp upstream
Rr529295	regulatory region 529295			1041 bp proximal
Tssr148927	transcription start site region 148927			1126 bp upstream
Tssr148928	transcription start site region 148928			397 bp upstream
Tssr148929	transcription start site region 148929			152 bp upstream
Tssr148930	transcription start site region 148930			99 bp upstream
Tssr148931	transcription start site region 148931			210 bp downstream
Tssr148932	transcription start site region 148932			360 bp downstream
Tssr148933	transcription start site region 148933			576 bp downstream
Tssr148934	transcription start site region 148934			1884 bp downstream