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rs258129934 SNP Detail
Summary
  • ID
    rs258129934
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385753 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACAGAAAGG AGGCATGCCA
AGCAGAGAGG CCTGGGGTCT TTGGTAAGTA GGCTGTTAGA TATGGCTACC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT CCATCTTTAC TTACAAATCA TACCACGCAT
GCTAACTTTT CTCTCGAGAC AATCTACTTG CTCTGTATCA AATGAAGATA ATTTCTCCAT
Y
CCATCTAGCA CAACCTGCAG TGAACTTCAT CAGCGGGGAC TTGCTCTATC CCTAGTTTGA
GGCAGCAGTC TTGAAGCTAG GAACAAGGAG GGATGTATTC AGGAGGAAGG ATCAGTATTT
CAGAAAACAG AAAGGTGGCC TGGGCTTTGG AGGGTGGACA GACACAGGCC AGTGGTTGGT
CAACTATTTG CCTGAAGGTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552122 MGP_WTSI_19_44471804 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258129934 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552122 MGP_WTSI_19_44471804 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385753 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 48 bp distal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 144 bp distal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 31 bp distal
Rr548237 regulatory region 548237 1896 bp distal
Rr548238 regulatory region 548238 233 bp distal
Rr548239 regulatory region 548239 1400 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 950 bp upstream
Tssr156606 transcription start site region 156606 888 bp downstream
Tssr156607 transcription start site region 156607 567 bp downstream
Tssr156608 transcription start site region 156608 152 bp downstream
Tssr156609 transcription start site region 156609 37 bp upstream
Tssr159453 transcription start site region 159453 2000 bp upstream
Tssr159454 transcription start site region 159454 1981 bp upstream
Tssr159455 transcription start site region 159455 1675 bp upstream
Tssr159456 transcription start site region 159456 1556 bp upstream
Tssr159457 transcription start site region 159457 1527 bp upstream
Tssr159458 transcription start site region 159458 1493 bp upstream
Tssr159459 transcription start site region 159459 1401 bp upstream
Tssr159460 transcription start site region 159460 1365 bp upstream
Tssr159461 transcription start site region 159461 1304 bp upstream
Tssr159462 transcription start site region 159462 1272 bp upstream
Tssr159463 transcription start site region 159463 1233 bp upstream
Tssr159464 transcription start site region 159464 1203 bp upstream
Tssr159465 transcription start site region 159465 1183 bp upstream
Tssr159466 transcription start site region 159466 1165 bp upstream
Tssr159467 transcription start site region 159467 1101 bp upstream
Tssr159468 transcription start site region 159468 855 bp upstream
Tssr159469 transcription start site region 159469 790 bp upstream
Tssr159470 transcription start site region 159470 776 bp upstream
Tssr159471 transcription start site region 159471 743 bp upstream
Tssr159472 transcription start site region 159472 717 bp upstream
Tssr159473 transcription start site region 159473 698 bp upstream
Tssr159474 transcription start site region 159474 676 bp upstream
Tssr159475 transcription start site region 159475 629 bp upstream
Tssr159476 transcription start site region 159476 611 bp upstream
Tssr159477 transcription start site region 159477 602 bp upstream
Tssr159478 transcription start site region 159478 581 bp upstream
Tssr159479 transcription start site region 159479 563 bp upstream
Tssr159480 transcription start site region 159480 531 bp upstream
Tssr159481 transcription start site region 159481 472 bp upstream
Tssr159482 transcription start site region 159482 384 bp upstream
Tssr159483 transcription start site region 159483 286 bp upstream
Tssr159484 transcription start site region 159484 259 bp upstream
Tssr159485 transcription start site region 159485 141 bp upstream
Tssr159486 transcription start site region 159486 127 bp upstream
Tssr159487 transcription start site region 159487 45 bp upstream
Tssr159488 transcription start site region 159488 2 bp upstream
Tssr159489 transcription start site region 159489 15 bp downstream
Tssr159490 transcription start site region 159490 117 bp downstream
Tssr159491 transcription start site region 159491 152 bp downstream
Tssr159492 transcription start site region 159492 203 bp downstream
Tssr159493 transcription start site region 159493 229 bp downstream
Tssr159494 transcription start site region 159494 249 bp downstream
Tssr159495 transcription start site region 159495 367 bp downstream
Tssr159496 transcription start site region 159496 437 bp downstream
Tssr159497 transcription start site region 159497 450 bp downstream
Tssr159498 transcription start site region 159498 462 bp downstream
Tssr159499 transcription start site region 159499 492 bp downstream
Tssr159500 transcription start site region 159500 523 bp downstream
Tssr159501 transcription start site region 159501 538 bp downstream
Tssr159502 transcription start site region 159502 574 bp downstream
Tssr159503 transcription start site region 159503 587 bp downstream
Tssr159504 transcription start site region 159504 666 bp downstream
Tssr159505 transcription start site region 159505 779 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory