rs258135023 SNP Detail

Summary

• ID
  rs258135023
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84407783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCATCTA GCAATCACAG
  TAGAAGTCAG ACCATTTTCA CCATTCCTCT AAAGCAGTGT CCTCAACTGT TCTAATGCAT
  CGACCCTTTA ATACAGTGTT TCATGTGGTG GTGAGCCCCA ACCATAGTCA TTTTCATTGT
  TAATACTGTA ATTTTGCTAC TGTTATGAAT TGTAAGGTAA ATATCTGATA TGCAGGATGA
  W
  CTTAGGTGAA ACAGATTGAG AATCTCTGCT CTGAAGCACC AGTGTAGCAT TTAATTGTCA
  CTTATATCCC TTAACCCTCC CACATCTTCC TCTCAACCTG TCAGCCCTAG GCAACTACCA
  GCCTACTTTC TGTTTTCAGA GATTTCGGGG CAAATTGCTT AACCCATCTC TTTTCTTTTC
  TAGAAAATGG GTTTGAGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386712648	MGP_WTSI_12_85701959	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258135023					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386712648	MGP_WTSI_12_85701959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84407783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			747 bp upstream
Cpgi4867	CpG island 4867			597 bp proximal
Fam161b	family with sequence similarity 161, member B			Intron
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			704 bp upstream
Rr469627	regulatory region 469627			1763 bp distal
Rr469628	regulatory region 469628			300 bp proximal
Rr469629	regulatory region 469629			384 bp proximal
Rr469630	regulatory region 469630			802 bp proximal
Tssr114338	transcription start site region 114338			627 bp upstream
Tssr114339	transcription start site region 114339			992 bp upstream
Tssr114340	transcription start site region 114340			1020 bp upstream
Tssr116998	transcription start site region 116998			773 bp downstream
Tssr116999	transcription start site region 116999			793 bp downstream