rs258136964 SNP Detail

Summary

• ID
  rs258136964
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTTGTGT AGAATTATCT GCAAATGAGT CATTACATCA
  TTATGGAAAG TTAGTTGTTA AACTAACCAG AGCATTGCTT AAATAATTTG TGGCAATCCT
  C
  TCTTGGAATT TTCCAAACAA GTATTTTTGG GCTGAATGTG ACCCATTTTT TTGCATTGCC
  CTTTTTTTTT TTATTAAAGC GAAGACTATA CACTTATTT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320724078	CHEV_3_38782427	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258136964					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937654 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1477 bp proximal
Gm65329	predicted gene, 65329	1161 bp downstream
Rr575715	regulatory region 575715	188 bp distal
Rr575716	regulatory region 575716	480 bp distal
Rr575717	regulatory region 575717	105 bp proximal
Rr575718	regulatory region 575718	968 bp proximal
Tssr28930	transcription start site region 28930	1807 bp upstream