rs258137836 SNP Detail

Summary

• ID
  rs258137836
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10651269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAACTTT GTATAATGAT
  CACACAAAGT AATTGGTAGG CCACCTCGTA CATTTATCAT TTCCTGATCA GCTGTAATCA
  ATCACAAACA TGGGTTTTTA GTTCAGTGTT CAGTATTGCT GATCTCAGAA TACTACACTG
  TGTAAGAAGA CTTAGTGATA GCCGGGCAGT GGTGGCGCAC GCCTTTAATC CCAGCACTTG
  K
  GAGGCAGAGG CAGGCGGATT TCTGAGTTCA AGGCCAGCCT GGTCTACAGA GTGAGTTCCA
  GGACAGCCAG GGCTACACAG AGAAACCCTG TCTCGGAGAA GGAAAAAAAA AGAAGAAGAA
  GACTTAGTGA TAAATTAGTC ACTCAAAGGT GGCAAGTTTT GTTTGTTTGT TTGTGTTTTT
  AAAGATATTT TGCATTTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395387181	MGP_WTSI_16_10833498	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258137836					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395387181	MGP_WTSI_16_10833498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10651269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7956	CpG island 7956	1312 bp proximal
Gm17913	predicted gene, 17913	1146 bp downstream
Gm26822	predicted gene, 26822	within coordinates
Rmi2	RecQ mediated genome instability 2	1654 bp upstream
Rr404679	regulatory region 404679	1441 bp upstream
Rr511605	regulatory region 511605	1164 bp proximal
Tssr137059	transcription start site region 137059	1641 bp upstream
Tssr137060	transcription start site region 137060	1681 bp upstream
Tssr139967	transcription start site region 139967	1929 bp downstream