rs258143744 SNP Detail

Summary

• ID
  rs258143744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:137745914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGGGCCT CTGGAGGCAC
  CGGAGGCAGA TCATTGGATT CTAGGTTGGA GCTGGCTAGT TTGGGCATAA GCACCCCTAT
  CCCGCAGCCA GGCCTGTCTC AGGGCCCCAC CTCTTGGCTC CGCCCGCCCC CTACTTCTCC
  TGGACCACAG GCCCGCTCCT TCACAGGGGG GCTGGGCCAG CTGGCAGGAC CTGGCAAGGC
  Y
  AAGGTGGAGA CACCCCCGCT GTCAGCATCT CCACCCCAGC AGCGCCCCCC AGGGCCTGGG
  ACTGGAGATA GTGCTCAGAC CCTGCCCTCT CTGAGGGTAG AAGTGGAGTC TGGGGGTTCA
  GCAGCCGCAA CCCCTCCACT GTCACGGAGA AGAGATGGAG CAGTTCGGCT GAGGATGGAG
  TTAGTTGCTC CAGCGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884386	MGP_WTSI_5_138188880	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258143744					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884386	MGP_WTSI_5_138188880	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137745914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	1165 bp distal
Gm57848	predicted gene, 57848	Coding-Synonymous
Gm68923	predicted gene, 68923	597 bp downstream
Rr622971	regulatory region 622971	1646 bp distal
Rr622972	regulatory region 622972	658 bp distal
Rr622973	regulatory region 622973	332 bp distal
Rr622974	regulatory region 622974	59 bp distal
Rr622975	regulatory region 622975	533 bp proximal
Tssr49366	transcription start site region 49366	1855 bp downstream
Tssr49367	transcription start site region 49367	1688 bp downstream
Tssr49368	transcription start site region 49368	1625 bp downstream
Tssr49369	transcription start site region 49369	1474 bp downstream
Tssr49370	transcription start site region 49370	1458 bp downstream
Tssr49371	transcription start site region 49371	1403 bp downstream
Tssr49372	transcription start site region 49372	1278 bp downstream
Tssr49373	transcription start site region 49373	1035 bp downstream
Tssr49374	transcription start site region 49374	1001 bp downstream
Tssr49375	transcription start site region 49375	951 bp downstream
Tssr49376	transcription start site region 49376	735 bp downstream
Tssr49377	transcription start site region 49377	677 bp downstream
Tssr49378	transcription start site region 49378	563 bp downstream
Tssr49379	transcription start site region 49379	119 bp downstream
Tssr49380	transcription start site region 49380	10 bp downstream
Tssr49381	transcription start site region 49381	within coordinates
Tssr49382	transcription start site region 49382	62 bp upstream
Tssr49383	transcription start site region 49383	1314 bp upstream
Tssr54036	transcription start site region 54036	333 bp downstream