rs258148354 SNP Detail

Summary

• ID
  rs258148354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56266083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCCCTTT TTCAGGGAAT ATTAAGCTAC
  TAGTCATTCA GATATTCACA GATCAGAACA TAGCACATAG ACATAGCCTC TCTCCTGCCA
  CCTACTGACG CGCATGTGAC ACAGCAGTCA CAACTGCAAG GCCTCTGGGG GAAGGGGCTT
  Y
  AGGTTTCTAA GCCCACCTTG CTGCTTCTCT TTCTCCTTCC TTCTCCCCTC CTGTCACCCA
  CTCTGAGACC TGGGTTTTCT CACACACCCA TAAAGTGATG CATCCATTTC TATACCTTCA
  GCTGACAATA CCTAACACCA ACCAATCACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856844	CHEV_19_56352141	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258148354					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56266083 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	6 bp upstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	278 bp distal
Rr549994	regulatory region 549994	48 bp distal
Rr549995	regulatory region 549995	351 bp proximal
Rr549996	regulatory region 549996	377 bp proximal
Rr549997	regulatory region 549997	441 bp proximal