rs258150311 SNP Detail

Summary

• ID
  rs258150311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70213968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGGAA AGTGATTCTC
  TGATCTCTAC ATTTGCACCT TGGTACACGG TATGTGCATG CCAACACACA CACACACTCA
  CTACATTTAC ATTAAGTAAA TGTAAAATAT TTTAAATTTG ATTTTATTGT TTTACTCACT
  CACTTTACAT CCCACTCACT GCCCACTCCC AGTCACCCCC TTCCTCAATC CTTCCCCATC
  Y
  CCCCCCCTCC TCTGAGCAGA TCCCCGCCCC CCCCCCCCAT TTCCCCTCAC CCTCCTAACT
  CTCCTATCAA GTCTCTAGGC TCTTCCTCTC CCACTGAGGC CAGACAAGAC AGCCCAGCTG
  GAAGAACATG TCCCACATAC AGCTTTTGGG ATAGTCCCTG TTCCAGTTGT TTGGGGCCCA
  CATGAAGGCC AAGCTGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380809367	MGP_WTSI_10_69840886	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	C	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258150311					SNP	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380809367	MGP_WTSI_10_69840886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70213968 () rs orientation: forward

Symbol	Name	Function Class
Rr220210	regulatory region 220210	1433 bp proximal
Tssr94018	transcription start site region 94018	558 bp upstream