rs258156555 SNP Detail

Summary

• ID
  rs258156555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117805477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtggcaGGT TGACAGTGGT GGATTCTTAT
  GCCAAGGTTC ACATCTCATC CATTCAGGGA ACTATAGACA GTTCTTATTC CCTTAAAGAA
  ACATTTTTAG TGGAttcgtt tttattttat gtgcctggat gttttacctg tgtgcgtgcg
  Y
  gcacacacac acacacacac acacacacac acacaaaacc tgcatgaagt gtcagcagag
  gccagatgag gacactgaat cctgtggtgg tttgaataag aatgatcccc acagAACCAA
  CCAAGCAGCA GAACTTGGCA GCTTGCTTAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324203259	CHEV_12_119080215	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258156555					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117805477 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	1732 bp upstream
Cpgi5229	CpG island 5229	1513 bp proximal
Rr265167	regulatory region 265167	1323 bp proximal
Tssr3984	transcription start site region 3984	1698 bp upstream
Tssr115551	transcription start site region 115551	1747 bp upstream
Tssr115552	transcription start site region 115552	1952 bp upstream